Publications

Primary tabs

Retrieved Entries: 467 [» Advanced search reports]

Subject

Grant

Advanced options

Project

Lab

Target

Node ID

DB ID

VRLID

2023

Devendra Kumar Jangid, Neal R Brodnik, McLean P Echlin, Samantha Daly, Tresa Pollock, B.S. Manjunath,

“Titanium 3D Microstructure for Physics-based Generative Models: A Dataset and Primer”,

International Conference on Machine Learning Workshop, Hawaii, USA, Aug. 2023.

Devendra K. Jangid, Neal R. Brodnik, McLean P. Echlin, Tresa M. Pollock, Samantha H. Daly, B.S. Manjunath,

“Q-RBSA: High-Resolution 3D EBSD Map Generation Using An Efficient Quaternion Transformer Network”,

Mar. 2023.

2022

Devendra K Jangid, Neal R Brodnik, Michael G Goebel, Amil Khan, SaiSidharth Majeti, McLean P Echlin, Samantha H Daly, Tresa M Pollock, BS Manjunath,

“Adaptable physics-based super-resolution for electron backscatter diffraction maps”,

NPJ Computational Materials, Dec. 2022.

Devendra K. Jangid, Neal R. Brodnik, Amil Khan, Michael G. Goebel, McLean P. Echlin, Tresa M. Pollock, Samantha H. Daly & B. S. Manjunath ,

“3D Grain Shape Generation in Polycrystals Using Generative Adversarial Networks”,

Integrating Materials and Manufacturing Innovation, Jan. 2022.

R. Austin McEver, Bowen Zhang, Connor Levenson, A S M Iftekhar, B.S. Manjunath,

“Context-Driven Detection of Invertebrate Species in Deep-Sea Video ”,

CVPR Workshop, New Orleans, LA, Jun. 2022.

2020

Devendra K. Jangid, Neal R. Brodnik, Amil Khan, McLean P. Echlin, Tresa M. Pollock, Sam Daly, B.S. Manjunath,

“3DMaterialGAN: Learning 3D Shape Representation from Latent Space for Materials Science Applications”,

arXiv, Jul. 2020.

Satish Kumar, Carlos Torres, Oytun Ulutan, Alana Ayasse, Dar Roberts, B. S. Manjunath,

“Deep Remote Sensing Methods for Methane Detection in Overhead Hyperspectral Imagery”,

The IEEE Winter Conference on Applications of Computer Vision (WACV) 2020, Mar. 2020.

2014

Jiejun Xu, Vignesh Jagadeesh 2nd B.S. Manjunath,

“Multi-label Learning with Fused Multimodal Bi-relational Graph”,

IEEE Transaction on Multimedia, vol. 16, no. 2, pp. 403-412, Feb. 2014.

A. Baddeley, A. Jammalamadaka and G. Nair ,

“Multitype point process analysis of spines on the dendrite network of a neuron”,

Journal of Royal Statistical Society, vol. Series C (Applied Statistics), Feb. 2014.

S. Karthikeyan,

“Modeling Eye Tracking Data with Application to Object Detection”,

Sep. 2014.

A. M. Rahimi, R.J. Miller, D.V. Fedorov, S. Sunderrajan, B.M. Doheny, H.M. Page, B.S. Manjunath,

“Marine Biodiversity Classification Using Dropout Regularization”,

2014 ICPR Workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI),, pp. 80-87, Stockholm, Aug. 2014.

2013

S. Karthikeyan, Vignesh Jagadeesh, Renuka Shenoy, Miguel Eckstein and B.S. Manjunath,

“From Where and How to What We See”,

IEEE International Conference on Computer Vision, Sydney, Dec. 2013.

Lakshmnanan Nataraj, Dhilung Kirat, B.S. Manjunath and Giovanni Vigna,

“SARVAM: Search And RetrieVAl of Malware”,

Annual Computer Security Applications Conference (ACSAC) Workshop on Next Generation Malware Attacks and Defense (NGMAD), New Orleans, Dec. 2013.

Vignesh Jagadeesh, James Anderson, Bryan Jones, Robert Marc, Steven Fisher and B.S. Manjunath,

“Robust Segmentation based Tracing using an Adaptive Wrapper for Inducing Priors”,

IEEE Transactions on Image Processing, vol. 22, no. 12, pp. 4952-4963, Dec. 2013.

Jiejun Xu, Vignesh Jagadeesh, Zefeng Ni, Santhoshkumar Sunderrajan and B.S. Manjunath,

“Graph-based Topic-focused Retrieval in a Distributed Camera Network”,

IEEE Transaction on Multimedia, vol. 15, no. 8, pp. 2046-2057, Dec. 2013.

Vignesh Jagadeesh, James Anderson, Bryan Jones, Robert Marc, Steven K Fisher and B.S Manjunath,

“Synapse Classification and Localization in Electron Micrographs”,

Pattern Recognition Letters, vol. 43, pp. 17-24, Nov. 2013.

Diana Delibaltov, Pratim Ghosh, Volkan Rodoplu, Michael Veeman, William Smith and B.S. Manjunath,

“A Linear Program Formulation for the Segmentation of Ciona Membrane Volumes”,

International Conference on Medical Image Computing and Computer Assisted Intervention, Sep. 2013.

S. Karthikeyan, Vignesh Jagadeesh and B. S. Manjunath,

“Learning Bottom-Up Text Attention Maps For Text Detection Using Stroke Width Transform”,

IEEE International Conference on Image Processing, Sep. 2013.

Nhat Vu, Vignesh Jagadeesh, and B.S.Manjunath,

“Mutilabel MRFs with Label Adjacency Constraint: Globally Optimal Solutions and Applications”,

VRL, ECE, University of California, Santa Barbara, Jun. 2013.

R.H.J. Fick, D. Fedorov, A.H.K. Roeder and B.S. Manjunath,

“Simultaneous cell tracking and image alignment in 3D CLSM imagery of growing Arabidopsis thaliana sepals”,

10th International Symposium on Biomedical Imaging (ISBI), pp. 914-917, Apr. 2013.

Pratim Ghosh and B.S. Manjunath,

“Robust Simultaneous Registration and Segmentation with Sparse Error Reconstruction”,

IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 35, no. 2, Feb. 2013.

2010

A.H.K. Roeder , V. Chickarmane, A.Cunha, B. Obara, B.S. Manjunath and E.M. Meyerowitz,

“Variability in the Control of Cell Division Underlies Sepal Epidermal Patterning in Arabidopsis thaliana”,

PLoS Biology, vol. 8, no. 5, pp. e1000367, May. 2010.

Luca Bertelli, Shivkumar Chandrasekaran, Frederic Gibou and B.S. Manjunath,

“On the Length and Area Regularization for Multiphase Level Set Segmentation”,

International Journal on Computer Vision, vol. 90, no. 3, pp. 267-282, Dec. 2010.

Diego Piedrahita, Israel Hernandez, Alejandro Lopez-Tobon, Dmitry Fedorov, Boguslaw Obara, B. S. Manjunath, Ryan L. Boudreau, Beverly Davidson, Frank LaFerla, Juan Carlos Gallego-Gomez, Kenneth S. Kosik, and Gloria Patricia Cardona-Gomez,

“Silencing of CDK5 Reduces Neurofibrillary Tangles in Transgenic Alzheimer's Mice”,

Journal of Neuroscience, vol. 30, no. 42, pp. 13966-13976, Oct. 2010.

Vignesh Jagadeesh and B. S. Manjunath,

“INTERACTIVE GRAPH CUT SEGMENTATION OF TOUCHING NEURONAL STRUCTURES FROM ELECTRON MICROGRAPHS”,

IEEE International Conference on Image Processing, Sep. 2010.

Pradeep Koulgi, Mehmet Emre Sargin, Kenneth Rose and B. S. Manjunath,

“Graphical Model-based Tracking of Curvilinear Structures in Bio-image Sequences”,

IEEE International Conference on Pattern Recognition, Aug. 2010.

M.E. Sargin, P. Ghosh, B. S. Manjunath and K. Rose,

“Object Tracking with Ratio Cycles Using Shape and Appearance Cues”,

IEEE International Conference on Pattern Recognition, pp. 3649-3652, Aug. 2010.

Pratim Ghosh, M.E. Sargin, B.S. Manjunath,

“Generalized Simultaneous Registration and Segmentation”,

IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 1363-1370, Jun. 2010.

Pratim Ghosh, Luca Bertelli, Baris Sumengen, and B.S. Manjunath,

“A Non-Conservative Flow Field for Robust Variational Image Segmentation”,

IEEE Transactions on Image Processing, vol. 19, no. 2, pp. 478-490, Feb. 2010.

2012

Enrique Alegre, MT Garcia-Ordas, Victor Gonzalez-Castro, S Karthikeyan,

“Vitality assessment of boar sperm using NCSR texture descriptor in digital images”,

Sep. 2012.

Diana Delibaltov, S. Karthikeyan, Vignesh Jagadeesh and B. S. Manjunath,

“Robust Biological Image Sequence Analysis Using Graph Based Approaches”,

Asilomar Conference On Signals, Systems and Computers (ACSSC), Monterey, CA, Nov. 2012.

2006

Luca Bertelli, Baris Sumengen, B.S. Manjunath,

“Redundancy in All Pairs Fast Marching Method”,

IEEE International Conference on Image Processing 2006 (ICIP06), Atlanta, GA USA, Oct. 2006.

Dmitry Fedorov, Baris Sumengen and B. S. Manjunath,

“Multi-Focus Imaging using Local Focus Estimation and Mosaicking”,

IEEE International Conference on Image Processing 2006 (ICIP06), Atlanta, GA USA, Oct. 2006.

Jiyun Byun, Mark R. Verardo, Baris Sumengen, Geoffrey P. Lewis, B. S. Manjunath and Steven K. Fisher,

“Automated tool for the detection of cell nuclei in digital microscopic images: Application to retinal images”,

Molecular Vision, vol. 12, pp. 949-960, http://www.molvis.org/molvis/v12/a107/, Aug. 2006.

Alphan Altinok, Motaz El-Saban, Austin Peck, Leslie Wilson, Stuart Feinstein, B.S Manjunath and Kenneth Rose,

“Activity Analysis in Microtubule Videos by Mixture of Hidden Markov Models”,

International Conference on Computer Vision and Pattern Recognition (CVPR), New York, NY, Jun. 2006.

Baris Sumengen, Luca Bertelli and B.S. Manjunath,

“Fast and Adaptive Pairwise Similarities for Graph Cuts-based Image Segmentation”,

IEEE CVPR Workshop on Perceptual Organization in Computer Vision (POCV), New York City, Jun. 2006.

Motaz El-Saban, Alphan Altinok, Austin Peck, Charles Kenney, Stuart Feinstein, Leslie Wilson, Kenneth Rose and B.S Manjunath,

“Automated tracking and modeling of microtubule dynamics”,

IEEE International Symposium on Biomedical Imaging (ISBI), Crystal City, CA, Apr. 2006.

M.R. Verardo, G.P. Lewis, M. Takeda, K.A. Linberg, U. Wilhelmsson, M. Pekny, D.F. Chen and S.K. Fisher,

“Lack of Intermediate Filaments in GFAP -/-vim-/- Mice leads to Changes in Mueller Cell Endfeet and Ganglion Cells Following Retinal Detachment”,

Invest Ophthalmol Vision Science 2006;47: Association for Research in Vision and Ophthalmology (ARVO) E-Abstract 4225, Fort Lauderdale, Florida, USA, Apr. 2006.

S. K. Fisher, J. Byun, D. Fedorov, N. Vu, B. Sumengen, M. Verardo, G. P. Lewis and B. S. Manjunath,

“Image Informatics Tools for the analysis of Retinal Images”,

Invest Ophthalmol Vision Science 2006;47: Association for Research in Vision and Ophthalmology (ARVO) E-Abstract 4225, Fort Lauderdale, Florida, USA, Apr. 2006.

B. S. Manjunath, B. Sumengen, Z. Bi, J. Byun, M. El-Saban, D. Fedorov and N. Vu,

“Towards Automated Bioimage Analysis: From Features to Semantics”,

IEEE International Symposium on Biomedical Imaging (ISBI), pp. 255-258, Crystal City, CA, Apr. 2006.

J. Byun, N. Vu, B. Sumengen and B. S. Manjunath,

“Quantitative analysis of immunofluorescent retinal images”,

IEEE International Symposium on Biomedical Imaging (ISBI), pp. 1268-1271, Crystal City, CA, Apr. 2006.

Vebjorn Ljosa, Arnab Bhattacharya and Ambuj K. Singh,

“LB-Index: A Multi-Resolution Index Structure for Images”,

22nd International Conference on Data Engineering (ICDE), Apr. 2006.

Motaz El-Saban,

“Automated Microtubule Tracking and Analysis”,

Ph.D. Thesis, University of California, Santa Barbara, Mar. 2006.

Md. Aleemuddin Siddiqi and S. Rao Jammalamadaka,

“Analysis of Microtubules using Growth Curve Modeling”,

VRL, ECE, UCSB, Mar. 2006.

Samuel J. Frame, S. Rao Jammalamadaka,

“Semi-Supervised Learning and Generalized Mixture Models in the analysis of Retinal Images”,

Center for Bio-Image Informatics, UCSB, Mar. 2006.

Vebjorn Ljosa, Arnab Bhattacharya and Ambuj K. Singh,

“Indexing Spatially Sensitive Distance Measures Using Multi-Resolution Lower Bounds”,

10th International Conference on Extending Database Technology (EDBT), Mar. 2006.

Tapas Manna, Douglas Thrower, Herbert P. Miller, Patrick Curmi and Leslie Wilson,

“Stathmin Strongly Increases the Minus End Catastrophe Frequency and Induces Rapid Treadmilling of Bovine Brain Microtubules at Steady State in Vitro”,

The Journal of Biological Chemistry, vol. 281, no. 4, pp. 2071â2078, Jan. 2006.

Alphan Altinok, Austin Peck and Kenneth Rose,

“Computational Methods for Analyzing Patterns in Dynamic”,

Biological Phenomena: An Application to Microtubule Dynamics, 2006.

Alphan Altinok, Baris Sumengen, B.S Manjunath and Kenneth Rose,

“Reducing incidental fluorescence in live cell imaging”,

ECE, UCSB, 2006.

Zhiqiang Bi and B.S. Manjunath,

“Analysis Of Confocal Microscope Images From Retina Detachment Experiments Using Texture Bases Features”,

VRL, ECE, UCSB, 2006.

Janis M. Bunker, Kathy Kamath, Leslie Wilson, Mary Ann Jordan, and Stuart C. Feinstein,

“Ftdp-17 Mutations Compromise the Ability of Tau to Regulate Microtubule Dynamics In Cells”,

The Journal of Biological Chemistry, 2006.

Luca Bertelli, Baris Sumengen, B. S. Manjunath and Frederic Gibou,

“A Multi-phase Level Sets framework for Pairwise Similarity-based Image Segmentation”,

VRL, ECE, University of California, Santa Barbara, Nov. 2006.

B. Sumengen and B. S. Manjunath,

“Graph Partitioning Active Contours (GPAC) for Image Segmentation”,

IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI), Apr. 2006.

2005

Dmitry Fedorov, Baris Sumengen and B. S. Manjunath,

“Tile-based framework for local enhancement of bio imagery”,

VRL, ECE, UCSB, Dec. 2005.

Arnab Bhattacharya, Vebjorn Ljosa, Jia-Yu Pan, Mark R. Verardo, Hyungjeong Yang, Christos Faloutsos and Ambuj K. Singh,

“ViVo: Visual vocabulary construction for mining biomedical images”,

Fifth IEEE International Conference on Data Mining (ICDM), pp. 50-57, Nov. 2005.

Robert John Coulier,

“A Storage, Processing, and Retrieval System for Microtubule Tracking Data”,

IEEE Computational Systems Bioinformatics Conference, Stanford University, CA, Aug. 2005.

Ambuj K. Singh, Arnab Bhattacharya and Vebjorn Ljosa,

“Current Challenges in Bioimage Database Design”,

International Workshop on Bioimage Data Mining and Informatics, pp. 375-379, IEEE Computational Systems Bioinformatics Conference (CSB), Aug. 2005.

M. A. El Saban and B. S. Manjunath,

“Spatiotemporal Contour Tracking of Microtubules”,

VRL, ECE, UCSB, Jun. 2005.

M. A. El Saban and B. S. Manjunath,

“Tracking curvilinear structures using active contours and application to microtubule videos”,

VRL, ECE, UCSB, Jun. 2005.

Steven K. Fisher, Geoffrey P. Lewis, Kenneth A. Linberg and Mark R. Verardo,

“Cellular remodeling in mammalian retina: results from studies of experimental retinal detachment”,

Progress in Retinal and Eye Research, vol. 25, pp. 395-431, 2005.

M.R. Verardo, G.P. Lewis, M. Takeda, K.A. Linberg, B. Wardak and M. Rabena,

“Retinal Detachment in Mice Deficient in GFAP and Vimentin: Reduced Glial Hypertrophy and Increased Ganglion Cell Remodeling”,

International Symposium on Neural Regeneration, 2005.

M.R. Verardo, G.P. Lewis, M. Takeda, B.M. Wardak, M.D. Rabena, D.F. Chen, S.K. Fisher,

“Glial Hypertrophy and Neuronal Remodeling in Mice Deficient in GFAP and Vimentin Following Experimental Retinal Detachment”,

Invest Ophthalmol Vision Science 2004;45: Association for Research in Vision and Ophthalmology (ARVO) E-Abstract 3000, Fort Lauderdale, Florida, USA, 2005.

B. Sumengen and B. S. Manjunath,

“Category Pruning in Image Databases using Segmentation and Distance Maps”,

European Signal Processing Conference (EUSIPCO), Sep. 2005.

B. Sumengen and B. S. Manjunath,

“Multi-scale Edge Detection and Image Segmentation”,

European Signal Processing Conference (EUSIPCO), Sep. 2005.

B. Sumengen and B. S. Manjunath,

“Edgeflow-driven Variational Image Segmentation: Theory and Performance Evaluation”,

IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI), May. 2005.

2017

Thuyen Ngo, B.S. Manjunath,

“Saccade Gaze Prediction Using a Recurrent Neural Network”,

IEEE International Conference on Image Processing, Beijing, China, Sep. 2017.

Archith J. Bency, Swati Rallapalli, Raghu K. Ganti, Mudhakar Srivatsa, and B. S. Manjunath,

“Beyond Spatial Auto-Regressive Models: Predicting Housing Prices with Satellite Imagery”,

IEEE Winter Conference on Applications of Computer Vision 2017, pp. 320-329, Santa Rosa, CA, Mar. 2017.

2016

Archith J Bency, Heesung Kwon, H Lee, S Karthikeyan, B.S. Manjunath,

“Weakly supervised localization using deep feature maps”,

Proc. European Conference on Computer Vision, pp. 714-731, Amsterdam, Netherlands, Oct. 2016.

Amir M Rahimi, R Ruschel, BS Manjunath,

“UAV Sensor Fusion with Latent Dynamic Conditional Random Fields in Coronal Plane Estimation”,

IEEE International Conference on Computer Vision and Pattern Recognition, Las Vegas, NV, Jun. 2016.

2015

A. M. Rahimi, L. Nataraj, B.S. Manjunath,

“Features We trust!”,

International Conference on Image Processing, pp. 3476-80, Quebec City, Canada, Sep. 2015.

S. Karthikeyan, Thuyen Ngo, Miguel Eckstein and B.S. Manjunath,

“Eye tracking assisted extraction of attentionally important objects from videos”,

IEEE International Conference on Computer Vision and Pattern Recognition, Boston, MA, Jun. 2015.

2011

V Jagadeesh, N Vu, B.S. Manjunath,

“Multiple Structure Tracing in 3D Electron Micrographs”,

Medical Image Computing and Computer Assisted Intervention (MICCAI), Toronto, Canada, Sep. 2011.

B. Obara, M. Veeman, J.H. Choi, W. Smith and B.S. Manjunath,

“Segmentation of ascidian notochord cells in DIC timelapse images ”,

Microscopy Research and Technique, vol. 74, no. 8, pp. 727-734, Aug. 2011.

E. Kiris, D. Ventimiglia, M.E. Sargin, M.R. Gaylord, A. Altinok, K. Rose, B.S. Manjunath, M.A. Jordan, L. Wilson and S.C. Feinstein,

“Combinatorial Tau Pseudophosphorylation”,

The Journal of Biological Chemistry, vol. 286, no. 16, pp. 14257-14270, Apr. 2011.

G. Abdollahian, M. Veeman, W. Smith and B.S. Manjunath,

“A curvicylindrical coordinate system for The Visualization and Segmentation of The Ascidian Tail”,

2011 IEEE International Symposium on Biomedical Imaging (ISBI), Chicago, Apr. 2011.

Diana Delibaltov, Pratim Ghosh, Michael Veeman, William Smith, and B.S. Manjunath,

“AN AUTOMATIC FEATURE BASED MODEL FOR CELL SEGMENTATION FROM CONFOCAL MICROSCOPY VOLUMES”,

2011 IEEE International Symposium on Biomedical Imaging (ISBI), Chicago, Apr. 2011.

2009

Elisa Drelie Gelasca, Boguslaw Obara, Dmitry Fedorov, Kristian Kvilekval and B. S. Manjunath,

“A biosegmentation benchmark for evaluation of bioimage analysis methods”,

BMC Bioinformatics, vol. 10, no. 1, pp. 368, Nov. 2009.

M.E. Sargin, L. Bertelli, B.S. Manjunath and K. Rose,

“Probabilistic Occlusion Boundary Detection on Spatio-Temporal Lattices”,

12th IEEE International Conference on Computer Vision,, Kyoto, Japan, Oct. 2009.

Pratim Ghosh, Mehmet Emre Sargin, and B.S. Manjunath,

“Robust Dynamical Model for Simultaneous Registration and Segmentation in a Variational Framework: A Bayesian Approach”,

12th IEEE International Conference on Computer Vision, Kyoto, Japan, Oct. 2009.

2008

Luca Bertelli, Pratim Ghosh, B. S. Manjunath, Frederic Gibou,

“Reference-based Probabilistic Segmentation as Non-Rigid Registration using Thin Plate Splines”,

Proc. IEEE International Conference on Image Processing, pp. 3052-3055, San Diego, CA, Oct. 2008.

Nhat Vu and B.S. Manjunath,

“Graph Cut Segmentation of Neuronal Structures from Transmission Electron Micrographs”,

Proc. IEEE International Conference on Image Processing, pp. 725-728, San Diego, CA, Oct. 2008.

Elisa Drelie Gelasca, Jiyun Byun, Boguslaw Obara, B.S. Manjunath,

“Evaluation and Benchmark for Biological Image Segmentation”,

IEEE International Conference on Image Processing, pp. 1816-1819, San Diego, CA, Oct. 2008.

Nhat Bao Sinh Vu,

“Image Segmentation with Semantic Priors: A Graph Cut Approach”,

Ph.D. Thesis, University of California, Santa Barbara, Sep. 2008.

Luca Bertelli, Baris Sumengen, B.S. Manjunath and Frederic Gibou,

“A Variational Framework for Multi-Region Pairwise Similarity-based Image Segmentation”,

IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 30, no. 8, pp. 1400-1414, Aug. 2008.

Nhat Vu and B.S. Manjunath,

“Shape Prior Segmentation of Multiple Objects with Graph Cuts”,

IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Anchorage, Alaska, USA, Jun. 2008.

Laura E. Boucheron,

“Object- and Spatial-Level Quantitative Analysis of Multispectral Histopathology Images for Detection and Characterization of Cancer”,

Ph.D. Thesis, University of California, Santa Barbara, Mar. 2008.

Laura E. Boucheron, Neal R. Harvey, and B. S. Manjunath,

“On Using Cytoplasm and Stroma Features in Automated Cancer Diagnosis”,