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2006

E. Kiris, M. Massie, A. Altinok, K. Rose, M.A. Jordan, L. Wilson and S.C. Feinstein,

“Effects of tau pseudophosphorylation at residues ser262 ser396 andser404 upon microtubule binding and assembly in vitro”,

American Society for Cell Biology (ASCB), San Diego, CA, USA, Dec. 2006.

Vebjorn Ljosa and Ambuj K. Singh,

“Probabilistic Segmentation and Analysis of Horizontal Cells”,

2006 IEEE International Conference on Data Mining (ICDM), pp. 980-985, Dec. 2006.

Marco Zuliani,

“Computational Methods for Automatic Image Registration”,

Ph.D. Thesis, University of California, Santa Barbara, Dec. 2006.

K. Solanki, U. Madhow, B. S. Manjunath, S. Chandrasekaran and I. El-Khalil,

“'Print and Scan' Resilient Data Hiding in Images”,

IEEE Transactions on Information Forensics and Security, vol. 1, no. 4, pp. 464-478, Dec. 2006.

S. Bhagavathy and B. S. Manjunath,

“Modeling and detection of geospatial objects using texture motifs”,

IEEE Transactions on Geoscience and Remote Sensing, vol. 44, no. 12, pp. 3706-3715, University of California, Santa Barbara, Dec. 2006.

Luca Bertelli, Baris Sumengen, B. S. Manjunath and Frederic Gibou,

“A Multi-phase Level Sets framework for Pairwise Similarity-based Image Segmentation”,

VRL, ECE, University of California, Santa Barbara, Nov. 2006.

K. Sullivan, K. Solanki, B.S. Manjunath, U. Madhow and S. Chandrasekaran,

“Determining achievable rates for secure zero divergence steganography”,

IEEE International Conference on Image Processing 2006 (ICIP06), Atlanta, GA USA, Oct. 2006.

K. Solanki, K. Sullivan, U. Madhow, B. S. Manjunath and S. Chandrasekaran,

“Provably secure steganography: Achieving zero K-L divergence using statistical restoration”,

IEEE International Conference on Image Processing 2006 (ICIP06), Atlanta, GA USA, Oct. 2006.

Luca Bertelli, Baris Sumengen, B.S. Manjunath,

“Redundancy in All Pairs Fast Marching Method”,

IEEE International Conference on Image Processing 2006 (ICIP06), Atlanta, GA USA, Oct. 2006.

Dmitry Fedorov, Baris Sumengen and B. S. Manjunath,

“Multi-Focus Imaging using Local Focus Estimation and Mosaicking”,

IEEE International Conference on Image Processing 2006 (ICIP06), Atlanta, GA USA, Oct. 2006.

J. Byun, M. R. Verardo, N. Vu, D. Fedorov, G. P. Lewis, S. K. Fisher and B. S. Manjunath,

“Quantifying structural distortions in retinal tissue before and after injury”,

Workshop on Multiscale Biological Imaging, Data Mining & Informatics, Santa Barbara, CA, USA, Sep. 2006.

Laura E. Boucheron, Neal R. Harvey and B. S. Manjunath,

“Utility of Multispectral Imaging for Analysis of Routine Clinical Histopathology Imagery”,

Workshop on Multiscale Biological Imaging, Data Mining & Informatics, Santa Barbara, CA, USA, Sep. 2006.

Dmitry Fedorov, Baris Sumengen and B. S. Manjunath,

“Mosaicking based framework for local enhancement of bio imagery”,

Workshop on Multiscale Biological Imaging, Data Mining & Informatics, Santa Barbara, CA, USA, Sep. 2006.

A. Bhattacharya and A. K. Singh,

“Prediction of Growth Parameters of In Vitro Microtubules in Association with Different Isoforms of Tau”,

Workshop on Multiscale Biological Imaging, Data Mining & Informatics, pp. 53-54, Santa Barbara, CA, USA, Sep. 2006.

Vebjorn Ljosa and Ambuj K. Singh,

“Probabilistic segmentation of horizontal cells”,

Workshop on multiscale biological imaging, data mining & informatics, pp. 39-40, Sep. 2006.

Pratim Ghosh, B.S. Manjunath and K.R. Ramakrishnan,

“A compact image signature for RTS-invariant image retrieval”,

IEE International Conference on Visual Information Engineering (VIE 2006), Bangalore, India, Sep. 2006.

Jiyun Byun, Mark R. Verardo, Baris Sumengen, Geoffrey P. Lewis, B. S. Manjunath and Steven K. Fisher,

“Automated tool for the detection of cell nuclei in digital microscopic images: Application to retinal images”,

Molecular Vision, vol. 12, pp. 949-960, http://www.molvis.org/molvis/v12/a107/, Aug. 2006.

K. Sullivan, U. Madhow, S. Chandrasekaran and B.S. Manjunath,

“Steganalysis for Markov cover data with applications to images”,

IEEE Transactions on Information Forensics and Security, vol. 1, no. 2, pp. 275-287, Jun. 2006.

Alphan Altinok, Motaz El-Saban, Austin Peck, Leslie Wilson, Stuart Feinstein, B.S Manjunath and Kenneth Rose,

“Activity Analysis in Microtubule Videos by Mixture of Hidden Markov Models”,

International Conference on Computer Vision and Pattern Recognition (CVPR), New York, NY, Jun. 2006.

Baris Sumengen, Luca Bertelli and B.S. Manjunath,

“Fast and Adaptive Pairwise Similarities for Graph Cuts-based Image Segmentation”,

IEEE CVPR Workshop on Perceptual Organization in Computer Vision (POCV), New York City, Jun. 2006.

S. K. Fisher, M. R. Verardo, J. Byun, G. P. Lewis, G. Luna, S. Kjellstrom, and P. Sieving,

“Retinal Changes Following Experimental Retinal Detachment In The Retinoschisin Knockout Mouse”,

Invest Ophthalmol Vision Science 2006;47: Association for Research in Vision and Ophthalmology (ARVO) EAbstract 1538, Fort Lauderdale, Florida, Apr. 2006.

Motaz El-Saban, Alphan Altinok, Austin Peck, Charles Kenney, Stuart Feinstein, Leslie Wilson, Kenneth Rose and B.S Manjunath,

“Automated tracking and modeling of microtubule dynamics”,

IEEE International Symposium on Biomedical Imaging (ISBI), Crystal City, CA, Apr. 2006.

M.R. Verardo, G.P. Lewis, M. Takeda, K.A. Linberg, U. Wilhelmsson, M. Pekny, D.F. Chen and S.K. Fisher,

“Lack of Intermediate Filaments in GFAP -/-vim-/- Mice leads to Changes in Mueller Cell Endfeet and Ganglion Cells Following Retinal Detachment”,

Invest Ophthalmol Vision Science 2006;47: Association for Research in Vision and Ophthalmology (ARVO) E-Abstract 4225, Fort Lauderdale, Florida, USA, Apr. 2006.

S. K. Fisher, J. Byun, D. Fedorov, N. Vu, B. Sumengen, M. Verardo, G. P. Lewis and B. S. Manjunath,

“Image Informatics Tools for the analysis of Retinal Images”,

Invest Ophthalmol Vision Science 2006;47: Association for Research in Vision and Ophthalmology (ARVO) E-Abstract 4225, Fort Lauderdale, Florida, USA, Apr. 2006.

B. S. Manjunath, B. Sumengen, Z. Bi, J. Byun, M. El-Saban, D. Fedorov and N. Vu,

“Towards Automated Bioimage Analysis: From Features to Semantics”,

IEEE International Symposium on Biomedical Imaging (ISBI), pp. 255-258, Crystal City, CA, Apr. 2006.

J. Byun, N. Vu, B. Sumengen and B. S. Manjunath,

“Quantitative analysis of immunofluorescent retinal images”,

IEEE International Symposium on Biomedical Imaging (ISBI), pp. 1268-1271, Crystal City, CA, Apr. 2006.

Vebjorn Ljosa, Arnab Bhattacharya and Ambuj K. Singh,

“LB-Index: A Multi-Resolution Index Structure for Images”,

22nd International Conference on Data Engineering (ICDE), Apr. 2006.

B. Sumengen and B. S. Manjunath,

“Graph Partitioning Active Contours (GPAC) for Image Segmentation”,

IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI), Apr. 2006.

Motaz El-Saban,

“Automated Microtubule Tracking and Analysis”,

Ph.D. Thesis, University of California, Santa Barbara, Mar. 2006.

Md. Aleemuddin Siddiqi and S. Rao Jammalamadaka,

“Analysis of Microtubules using Growth Curve Modeling”,

VRL, ECE, UCSB, Mar. 2006.

Samuel J. Frame, S. Rao Jammalamadaka,

“Semi-Supervised Learning and Generalized Mixture Models in the analysis of Retinal Images”,

Center for Bio-Image Informatics, UCSB, Mar. 2006.

Vebjorn Ljosa, Arnab Bhattacharya and Ambuj K. Singh,

“Indexing Spatially Sensitive Distance Measures Using Multi-Resolution Lower Bounds”,

10th International Conference on Extending Database Technology (EDBT), Mar. 2006.

Tapas Manna, Douglas Thrower, Herbert P. Miller, Patrick Curmi and Leslie Wilson,

“Stathmin Strongly Increases the Minus End Catastrophe Frequency and Induces Rapid Treadmilling of Bovine Brain Microtubules at Steady State in Vitro”,

The Journal of Biological Chemistry, vol. 281, no. 4, pp. 2071â2078, Jan. 2006.

Automated Microtubule Tracking and Analysis,

“A. Altinok, E. Kiris, B.S. Manjunath, L. Wilson, S. C. Feinstein, K. Rose”,

46th Annual Meeting of the American Society for Cell Biology, San Diego, CA, 2006.

Alphan Altinok, Austin Peck and Kenneth Rose,

“Computational Methods for Analyzing Patterns in Dynamic”,

Biological Phenomena: An Application to Microtubule Dynamics, 2006.

Alphan Altinok, Baris Sumengen, B.S Manjunath and Kenneth Rose,

“Reducing incidental fluorescence in live cell imaging”,

ECE, UCSB, 2006.

Zhiqiang Bi and B.S. Manjunath,

“Analysis Of Confocal Microscope Images From Retina Detachment Experiments Using Texture Bases Features”,

VRL, ECE, UCSB, 2006.

Janis M. Bunker, Kathy Kamath, Leslie Wilson, Mary Ann Jordan, and Stuart C. Feinstein,

“Ftdp-17 Mutations Compromise the Ability of Tau to Regulate Microtubule Dynamics In Cells”,

The Journal of Biological Chemistry, 2006.

2005

Dmitry Fedorov, Baris Sumengen and B. S. Manjunath,

“Tile-based framework for local enhancement of bio imagery”,

VRL, ECE, UCSB, Dec. 2005.

Kaushal Solanki,

“Multimedia Data Hiding: From Fundamental Issues to Practical Techniques”,

Ph.D. Thesis, University of California, Santa Barbara, Dec. 2005.

Arnab Bhattacharya, Vebjorn Ljosa, Jia-Yu Pan, Mark R. Verardo, Hyungjeong Yang, Christos Faloutsos and Ambuj K. Singh,

“ViVo: Visual vocabulary construction for mining biomedical images”,

Fifth IEEE International Conference on Data Mining (ICDM), pp. 50-57, Nov. 2005.

Kenneth Mark Sullivan,

“Image Steganalysis: Hunting & Escaping”,

Ph.D. Thesis, University of California, Santa Barbara, Sep. 2005.

K. Solanki, K. Sullivan, U. Madhow, B. S. Manjunath and S. Chandrasekaran,

“Statistical Restoration for Robust and Secure Steganography”,

IEEE International Conference on Image Processing, Genova, Italy, Sep. 2005.

M. Zuliani, C. S. Kenney and B. S. Manjunath,

“The Multiransac Algorithm and its Application to Detect Planar Homographies”,

IEEE International Conference on Image Processing, Genova, Italy, Sep. 2005.

B. Sumengen and B. S. Manjunath,

“Category Pruning in Image Databases using Segmentation and Distance Maps”,

European Signal Processing Conference (EUSIPCO), Sep. 2005.

B. Sumengen and B. S. Manjunath,

“Multi-scale Edge Detection and Image Segmentation”,

European Signal Processing Conference (EUSIPCO), Sep. 2005.

Robert John Coulier,

“A Storage, Processing, and Retrieval System for Microtubule Tracking Data”,

IEEE Computational Systems Bioinformatics Conference, Stanford University, CA, Aug. 2005.

Ambuj K. Singh, Arnab Bhattacharya and Vebjorn Ljosa,

“Current Challenges in Bioimage Database Design”,

International Workshop on Bioimage Data Mining and Informatics, pp. 375-379, IEEE Computational Systems Bioinformatics Conference (CSB), Aug. 2005.

M. A. El Saban and B. S. Manjunath,

“Spatiotemporal Contour Tracking of Microtubules”,

VRL, ECE, UCSB, Jun. 2005.

M. A. El Saban and B. S. Manjunath,

“Tracking curvilinear structures using active contours and application to microtubule videos”,

VRL, ECE, UCSB, Jun. 2005.

C. S. Kenney, M. Zuliani and B. S. Manjunath,

“An Axiomatic Approach to Corner Detection”,

International Conference on Computer Vision and Pattern Recognition (CVPR), San Diego, CA, USA, Jun. 2005.

B. Sumengen and B. S. Manjunath,

“Edgeflow-driven Variational Image Segmentation: Theory and Performance Evaluation”,

IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI), May. 2005.

K. Solanki, U. Madhow, B. S. Manjunath and S. Chandrasekaran,

“Modeling the Print-Scan Process for Resilient Data Hiding”,

SPIE Security, Steganography, and Watermarking of Multimedia Contents VII, vol. 5681, pp. 418-429, Edward J. Delp III, Ping W. Wong (Editors), Mar. 2005.

K. Sullivan, U. Madhow, S. Chandrasekaran and B. S. Manjunath,

“Steganalysis of spread spectrum data hiding exploiting cover memory”,

IS&T/SPIE's 17th Annual Symposium on Electronic Imaging Science and Technology, San Jose, CA, Jan. 2005.

Gang Wu, Amir Rahimi, Kingshy Goh, Tomy Tsai, Ankur Jain, Yi Wu, Edward Y. Chang and Yuan-fang Wang,

“Identifying color in motion in video sensors”,

Computer Vision and Pattern Recognition (CVPR), 2005.

A. Altinok, A. J. Peck, S. C. Feinstein, L. Wilson, B. S. Manjunath and K. Rose,

“Automated Motion Detection and Quantitation of Cell Components: Application to Dynamic Populations of Microtubules in Living Cells”,

45th Annual Meeting of the American Society for Cell Biology, San Francisco, CA, 2005.

Steven K. Fisher, Geoffrey P. Lewis, Kenneth A. Linberg and Mark R. Verardo,

“Cellular remodeling in mammalian retina: results from studies of experimental retinal detachment”,

Progress in Retinal and Eye Research, vol. 25, pp. 395-431, 2005.

M.R. Verardo, G.P. Lewis, M. Takeda, K.A. Linberg, B. Wardak and M. Rabena,

“Retinal Detachment in Mice Deficient in GFAP and Vimentin: Reduced Glial Hypertrophy and Increased Ganglion Cell Remodeling”,

International Symposium on Neural Regeneration, 2005.

M.R. Verardo, G.P. Lewis, M. Takeda, B.M. Wardak, M.D. Rabena, D.F. Chen, S.K. Fisher,

“Glial Hypertrophy and Neuronal Remodeling in Mice Deficient in GFAP and Vimentin Following Experimental Retinal Detachment”,

Invest Ophthalmol Vision Science 2004;45: Association for Research in Vision and Ophthalmology (ARVO) E-Abstract 3000, Fort Lauderdale, Florida, USA, 2005.

2004

K. Solanki, N. Jacobsen, U. Madhow, B. S. Manjunath and S. Chandrasekaran,

“Robust Image-Adaptive Data Hiding Based on Erasure and Error Correction”,

IEEE Transactions on Image Processing, vol. 13, no. 12, pp. 1627-1639, Dec. 2004.

M. El Saban and B. S. Manjunath,

“Interactive segmentation using curve evolution and relevance feedback”,

IEEE International Conference on Image Processing, Singapore, Oct. 2004.

K. Solanki, U. Madhow, B. S. Manjunath, and S. Chandrasekaran,

“Estimating and Undoing Rotation for Print-Scan Resilient Data Hiding”,

IEEE International Conference on Image Processing, Singapore, Oct. 2004.

Till Quack, Ullrich Monich, Lars Thiele, B.S. Manjunath,

“Cortina: A System for Large-scale, Content-based Web Image Retrieval”,

ACM Multimedia 2004, New York, NY, USA, Oct. 2004.

K. Sullivan, Z. Bi, U. Madhow, S. Chandrasekaran and B.S. Manjunath,

“Steganalysis of quantization index modulation data hiding”,

IEEE International Conference on Image Processing, pp. 1165-1168, Singapore, Oct. 2004.

M. Zuliani, S. Bhagavathy, B. S. Manjunath, C. S. Kenney,

“Affine-Invariant Curve Matching”,

IEEE International Conference on Image Processing, Singapore, Oct. 2004.

O. Dabeer, K. Sullivan, U. Madhow, S. Chandrasekaran and B.S. Manjunath,

“Detection of Hiding in the Least Significant Bit”,

IEEE Transactions on Signal Processing, Supplement on Secure Media I, vol. 52, no. 10, pp. 3046-3058, Oct. 2004.

Jelena TeÅ¡ic,

“Managing Large-scale Multimedia Repositories”,

Ph.D. Thesis, University of California, Santa Barbara, Sep. 2004.

Baris Sumengen,

“Variational Image Segmentation and Curve Evolution on Natural Images”,

Ph.D. Thesis, University of California, Santa Barbara, Sep. 2004.

M. Zuliani, C. S. Kenney, S. Bhagavathy, B. S. Manjunath,

“Drums and Curve Descriptors”,

British Machine Vision Conference, Kingston University, London, UK, Sep. 2004.

Xinding Sun,

“Motion Activity for Video Indexing”,

Ph.D. Thesis, University of California, Santa Barbara, Jun. 2004.

A. Singh, B. S. Manjunath and R. Murphy,

“Design of a Distributed Database for Bio-Molecular Images”,

ACM SIGMOD Records, vol. 33, no. 3, pp. 65-71, New York, NY, USA, Jun. 2004.

S. Newsam and B. S. Manjunath,

“Normalized Texture Motifs and Their Application to Statistical Object Modeling”,

IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Workshop on Perceptual Organization in Computer Vision, Washington, DC, Jun. 2004.

Baris Sumengen, Sitaram Bhagavathy and B. S. Manjunath,

“Graph Partitioning Active Contours for Knowledge-Based Geo-Spatial Segmentation”,

IEEE CVPR Workshop on Perceptual Organization in Computer Vision (POCV), Washington, DC, Jun. 2004.

M. Zuliani, C. Kenney and B. S. Manjunath,

“A Mathematical Comparison of Point Detectors”,

Second IEEE Image and Video Registration Workshop (IVR), Washington, DC, Jun. 2004.

Till Quack,

“Cortina: A System for Large-scale, Content-based Web Image Retrieval and the Semantics within”,

Master's Thesis, Swiss Federal Institute of Technology Zurich, University of California at Santa Barbara, Apr. 2004.

J. Byun, L. Wang, G. P. Lewis, S. K. Fisher and B.S. Manjunath,

“Challenges in Bio-Molecular Imaging and Information Discovery: Developing a Searchable, Distributed Retinal Image Database”,

Invest Ophthalmol Vision Science 2004;45: Association for Research in Vision and Ophthalmology (ARVO) E-Abstract 3000, Fort Lauderdale, Florida, USA, Apr. 2004.

S. Newsam, L. Wang, S. Bhagavathy, and B. S. Manjunath,

“Using texture to analyze and manage large collections of remote sensed image and video data”,

Journal of Applied Optics: Information Processing, vol. 43, no. 2, pp. 210-217, Jan. 2004.

S. Newsam, J. TeÅ¡ic, L.Wang and B.S. Manjunath,

“Issues in Mining Video Datasets”,

SPIE International Symposium On Electronic Imaging, Storage and Retrieval Methods and Applications for Multimedia, San Jose, California, Jan. 2004.

Xinding Sun, Jonathan Foote, Don Kimber, B. S. Manjunath,

“Region of Interest Extraction and Virtual Camera Control Based on Panoramic Video Capturing”,

IEEE Transactions on Multimedia, 2004.

2003

C. S. Kenney, B. S. Manjunath, M. Zuliani, M. G. A. Hewer and A. Van Nevel,

“A condition number for point matching with application to registration and postregistration error estimation”,

IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 25, no. 11, pp. 1437 - 1454, Nov. 2003.

K. Solanki, O. Dabeer, U. Madhow, B. S. Manjunath and Shiv Chandrasekaran,

“Robust Image-Adaptive Data Hiding: Modeling, Source Coding, and Channel Coding”,

41st Allerton Conference on Communications, Control, and Computing, Oct. 2003.

B. Sumengen, B. S. Manjunath, C. Kenney,

“Image segmentation using multi-region stability and edge strength”,

IEEE International Conference on Image Processing (ICIP), vol. 3, pp. 429-432, Barcelona, Spain, Sep. 2003.

J. TeÅ¡ic, S. Bhagavathy and B. S. Manjunath,

“Issues Concerning Dimensionality and Similarity Search”,

3rd International Symposium on Image and Signal Processing and Analysis (ISPA), Rome, Italy, Sep. 2003.

K. Solanki, O. Dabeer, B. S. Manjunath, U. Madhow and Shiv Chandrasekaran,

“A Joint Source-Channel Coding Scheme for Image-in-Image Data Hiding”,

IEEE International Conference on Image Processing (ICIP), vol. 2, pp. 743-746, Barcelona, Spain, Sep. 2003.

K. Sullivan, O. Dabeer, U. Madow, B. S. Manujunath and S. Chandrasekaran,

“LLRT Based Detection of LSB Hiding”,

IEEE International Conference on Image Processing (ICIP), vol. 1, pp. 497-500, Barcelona, Spain, Sep. 2003.

Lei Wang and B. S. Manjunath,

“A Semantic Representation for Image Retrieval”,

IEEE International Conference on Image Processing (ICIP), vol. 2, pp. 523-526, Barcelona, Spain, Sep. 2003.

M. A. El Saban and B. S. Manjunath,

“Video region segmentation by spatio-temporal watersheds”,

IEEE International Conference on Image Processing (ICIP), vol. 1, pp. 349-352, Barcelona, Spain, Sep. 2003.

S. Newsam, L. Wang, S. Bhagavathy and B. S. Manjunath,

“Using Texture to Annotate Remote Sensed Datasets”,

3rd International Symposium on Image and Signal Processing and Analysis (ISPA), Rome, Italy, Sep. 2003.

S. Bhagavathy, J. TeÅ¡ic and B. S. Manjunath,

“On the Rayleigh nature of Gabor filter outputs”,

IEEE International Conference on Image Processing (ICIP), vol. 3, pp. 745-748, Barcelona, Spain, Sep. 2003.

S. Newsam, S. Bhagavathy, and B. S. Manjunath,

“Object Localization Using Texture Motifs and Markov Random Fields”,

IEEE International Conference on Image Processing (ICIP), vol. 2, pp. 1049-1052, Barcelona, Spain, Sep. 2003.

J. TeÅ¡ic and B. S. Manjunath,

“Nearest Neighbor Search for Relevance Feedback”,

IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR), vol. 2, pp. 643-648, Madison, Wisconsin, Jun. 2003.

J. TeÅ¡ic, S. Newsam and B. S. Manjunath,

“Mining Image Datasets using Perceptual Association Rules”,

SIAM Sixth Workshop on Mining Scientific and Engineering Datasets in conjunction with the Third SIAM International Conference (SDM), San Francisco, California, May. 2003.